Plotting Guide¶

• GEM Rasters Raster views of GEM and GEM subsets.

• Genes vs Counts Gene (x-axis) vs counts (y-axis) scatter plots.

• GeneSet Overlap Heatmaps View the count or percent overlap of different GeneSets using heat maps.

• Gene-wise Scatter with Distributions Scatter plots of aggregations of gene values, e.g. mean vs variance, Fano, frequency, etc. plots.

• Sample-wise Distributions Distribution of count values on a sample-wise basis.

• UMAP Panels and Views Exploring UMAP with a Panel application, and how to directly generate plots.