gsforge
0.6

User Guide / Tutorial:

  • Introduction
  • Tour
  • Annotated Expression Matrix Creation
  • Set and Collection Creation
  • Interface Guide
  • Plotting Guide
  • R Integration Guide
  • Analysis Resources

Reference Examples:

  • Reference Plots
    • GEM Rasters
    • GeneSet Overlap Heatmap
    • Gene vs Counts
    • Gene-wise Aggregate Scatter and Distribution Plots
    • Grouped Gene Covariance
    • DGE Log-Fold Change vs Mean
    • Sample-wise Count Distributions
    • UMAP Embeddings
    • UpSetPlots
    • Volcano Plot of Differential Gene Expression Results
  • Normalization Examples

Walkthroughs:

  • Oryza sativa

API Reference:

  • API
  • Development
gsforge
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  • Reference Plots
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Reference PlotsΒΆ

Reference examples of plots and functions provided by GSForge.

  • GEM Rasters
  • GeneSet Overlap Heatmap
  • Gene vs Counts
  • Gene-wise Aggregate Scatter and Distribution Plots
  • Grouped Gene Covariance
  • DGE Log-Fold Change vs Mean
  • Sample-wise Count Distributions
  • UMAP Embeddings
  • UpSetPlots
  • Volcano Plot of Differential Gene Expression Results
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© Copyright 2021, Tyler Biggs, Stephen Ficklin.

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