gsforge
0.6

User Guide / Tutorial:

  • Introduction
  • Tour
  • Annotated Expression Matrix Creation
  • Set and Collection Creation
  • Interface Guide
  • Plotting Guide
  • R Integration Guide
  • Analysis Resources

Reference Examples:

  • Reference Plots
  • Normalization Examples

Walkthroughs:

  • Oryza sativa
    • 01 Loading data into an AnnotatedGEM
    • 02 Saving Normalizations to AnnotatedGEMs
    • 03 Viewing Gene Expression Distributions
    • 04 Creating GeneSets from Literature
    • 05 Viewing Reduced Dimension Embeddings
    • 06 Selecting Genes with Boruta
    • 07 Examining GeneSet Overlaps
    • 08 Scoring and Comparing GeneSets

API Reference:

  • API
  • Development
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Oryza sativa¶

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  • 01 Loading data into an AnnotatedGEM
  • 02 Saving Normalizations to AnnotatedGEMs
  • 03 Viewing Gene Expression Distributions
  • 04 Creating GeneSets from Literature
  • 05 Viewing Reduced Dimension Embeddings
  • 06 Selecting Genes with Boruta
  • 07 Examining GeneSet Overlaps
  • 08 Scoring and Comparing GeneSets
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© Copyright 2021, Tyler Biggs, Stephen Ficklin.

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