GSForge.utils.enrichment module

GSForge.utils.enrichment.count_set_terms(query_genes, term_df, min_term_count=2)

GSForge.utils.enrichment.get_genes_by_term(query_term, term_df)

GSForge.utils.enrichment.enrichment_score(query_genes, term_genes, background_genes)

Calculalte an enrichment score of term_genes in query_genes with a given background.

| Has term | Not Has term |

—————| ————-| ———— |

In module | n11 | n12 |

Not in module | n21 | n22 |

GSForge.utils.enrichment.ks_enrichment_score(gene_index, gene_scores, term_genes, exp=1)