GSForge.utils.generate_gem module¶
- class GSForge.utils.generate_gem.RandomGEMSimulator(**params)¶
Bases:
param.parameterized.ParameterizedBased on the publication from Freytag et al. BMC Bioinformatics (2015) 16:309.
doi.org/10.1371/journal.pbio.3000481
n_samples= param.Integer(readonly=False)n_genes= param.Integer(readonly=False)n_negative_control_genes= param.Integer(readonly=False)n_strongly_expressed_genes= param.Integer(readonly=False)n_signal_dims= param.Integer(readonly=False)n_random_noise_dims= param.Integer(readonly=False)n_signal_noise_dims= param.Integer(readonly=False)random_noise_sigma= param.Parameter(readonly=False)- n_samples = 0¶
- n_genes = 0¶
- n_negative_control_genes = 0¶
- n_strongly_expressed_genes = 0¶
- n_signal_dims = 0¶
- n_random_noise_dims = 0¶
- n_signal_noise_dims = 0¶
- random_noise_sigma = None¶
- beta_matrix()¶
- noise_matrix()¶
- noise_and_design_correlation_matrix()¶
- build_count_matrix()¶
- name = 'RandomGEMSimulator'¶